PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00184.23
Common NameAMTR_s00184p00048850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 269aa    MW: 30079.5 Da    PI: 4.8601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00184.23genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10128171654
                                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  ++eY ++L
  evm_27.model.AmTr_v1.0_scaffold00184.23 128 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIEYTREL 171
                                              479*********************66......**************7766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.96E-5120182No hitNo description
PROSITE profilePS5088814.678122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14125194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8128171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14129183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.89E-4219260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MELHHPIQED NAFQEEFLAL RREVWDIFPP ENDGIFSLFE NPIVSPPPIP QENGGFFPID  60
DDLAMGLIQQ DYVFDTGIQV PSTISFPENP MTHAFGVVNE QKLGEVPELV AGPVRGVGGE  120
KKCASKNLMA ERRRRKRLND RLSMLRSVVP KISKMDRTSI LGDTIEYTRE LLGRLKSLQE  180
EVDVNGLNLL TIFHQLQHNN AEEKRSTPKF DVEKRGSVTR IEVCCGGKPG LLHSTLNTME  240
ALGLEIQQCV MSCFGDFVMQ ALCLEGIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130137ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625580.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL13e-48BH093_ARATH; Transcription factor bHLH93
TrEMBLW1PV580.0W1PV58_AMBTC; Uncharacterized protein
STRINGGSMUA_Achr8P34120_0019e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-49beta HLH protein 93
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]